IL_9VXN_037

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9VXN|1|L5|G|748, 9VXN|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|G|745
9VXN|1|L5|A|746
9VXN|1|L5|A|747
9VXN|1|L5|G|748
9VXN|1|L5|G|749
9VXN|1|L5|U|750
9VXN|1|L5|G|751
9VXN|1|L5|G|752
*
9VXN|1|L5|U|911
9VXN|1|L5|G|912
9VXN|1|L5|U|913
9VXN|1|L5|U|914
9VXN|1|L5|A|915
9VXN|1|L5|C|916
9VXN|1|L5|A|917
9VXN|1|L5|G|918
9VXN|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

Large ribosomal subunit protein eL14

Chain LS

Large ribosomal subunit protein eL20