IL_9VXN_174
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 9VXN|1|S2|U|44, 9VXN|1|S2|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXN_174 not in the Motif Atlas
- Geometric match to IL_8GLP_191
- Geometric discrepancy: 0.0653
- The information below is about IL_8GLP_191
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88082.5
- Basepair signature
- cWW-L-tSS-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9VXN|1|S2|G|41
9VXN|1|S2|A|42
9VXN|1|S2|U|43
9VXN|1|S2|U|44
9VXN|1|S2|A|45
9VXN|1|S2|A|46
9VXN|1|S2|G|47
*
9VXN|1|S2|C|479
9VXN|1|S2|G|480
9VXN|1|S2|C|481
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SX
- Small ribosomal subunit protein uS12
Coloring options: