IL_9W0N_065
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9W0N|1|1|A|1801, 9W0N|1|1|C|1816, 9W0N|1|1|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9W0N_065 not in the Motif Atlas
- Homologous match to IL_8B0X_132
- Geometric discrepancy: 0.1088
- The information below is about IL_8B0X_132
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9W0N|1|1|U|1798
9W0N|1|1|G|1799
9W0N|1|1|C|1800
9W0N|1|1|A|1801
9W0N|1|1|A|1802
9W0N|1|1|A|1803
9W0N|1|1|C|1804
*
9W0N|1|1|G|1813
9W0N|1|1|G|1814
9W0N|1|1|A|1815
9W0N|1|1|C|1816
9W0N|1|1|G|1817
9W0N|1|1|U|1818
9W0N|1|1|A|1819
9W0N|1|1|U|1820
9W0N|1|1|A|1821
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain b
- Large ribosomal subunit protein uL2
Coloring options: