IL_9W0N_103

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9W0N_103 not in the Motif Atlas

Homologous match to IL_8B0X_172

Geometric discrepancy: 0.1145

The information below is about IL_8B0X_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.5

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9W0N|1|2|G|23
9W0N|1|2|G|24
9W0N|1|2|U|25
9W0N|1|2|C|26
9W0N|1|2|C|27
9W0N|1|2|C|28
*
9W0N|1|2|G|56
9W0N|1|2|A|57
9W0N|1|2|A|58
9W0N|1|2|A|59
9W0N|1|2|C|60

Current chains

Chain 2

5S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL5

Chain o

Large ribosomal subunit protein uL18