IL_9W0N_106

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9W0N_106 not in the Motif Atlas

Homologous match to IL_8B0X_175

Geometric discrepancy: 0.0722

The information below is about IL_8B0X_175

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_71138.1

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9W0N|1|2|C|71
9W0N|1|2|G|72
9W0N|1|2|A|73
9W0N|1|2|U|74
9W0N|1|2|G|75
9W0N|1|2|G|76
9W0N|1|2|U|77
9W0N|1|2|A|78
9W0N|1|2|G|79
*
9W0N|1|2|C|97
9W0N|1|2|G|98
9W0N|1|2|A|99
9W0N|1|2|G|100
9W0N|1|2|A|101
9W0N|1|2|G|102
9W0N|1|2|U|103
9W0N|1|2|A|104
9W0N|1|2|G|105

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain m

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL25