IL_9W0N_115

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9W0N_115 not in the Motif Atlas

Homologous match to IL_8B0X_009

Geometric discrepancy: 0.127

The information below is about IL_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9W0N|1|3|G|128
9W0N|1|3|A|129
9W0N|1|3|A|130
9W0N|1|3|A|131
*
9W0N|1|3|U|231
9W0N|1|3|G|232
9W0N|1|3|C|233

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

Small ribosomal subunit protein bS16

Chain V

Small ribosomal subunit protein uS17

Chain Y

Small ribosomal subunit protein bS20