IL_9WNQ_056

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_056 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.1509

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9WNQ|1|A|G|1401
9WNQ|1|A|C|1402
9WNQ|1|A|C|1403
9WNQ|1|A|C|1404
*
9WNQ|1|A|G|1497
9WNQ|1|A|U|1498
9WNQ|1|A|A|1499
9WNQ|1|A|A|1500
9WNQ|1|A|C|1501

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain x

mRNA