IL_9WNQ_075

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_075 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1015

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9WNQ|1|b|G|188
9WNQ|1|b|G|189
9WNQ|1|b|A|190
9WNQ|1|b|A|191
9WNQ|1|b|C|192
9WNQ|1|b|U|193
9WNQ|1|b|G|194
*
9WNQ|1|b|C|201
9WNQ|1|b|U|202
9WNQ|1|b|A|203
9WNQ|1|b|A|204
9WNQ|1|b|G|205
9WNQ|1|b|U|206
9WNQ|1|b|A|207
9WNQ|1|b|C|208

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain m

50S ribosomal protein L15