IL_9WNQ_099

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

9WNQ|1|b|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_099 not in the Motif Atlas

Geometric match to IL_5ZTM_001

Geometric discrepancy: 0.3573

The information below is about IL_5ZTM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9WNQ|1|b|G|879
9WNQ|1|b|G|880
9WNQ|1|b|G|881
*
9WNQ|1|b|U|895
9WNQ|1|b|A|896
9WNQ|1|b|C|897
9WNQ|1|b|C|898

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain Z

Transfer RNA; tRNA