IL_9WNQ_136

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9WNQ|1|b|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_136 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.1511

The information below is about IL_8B0X_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9WNQ|1|b|U|1712
9WNQ|1|b|A|1713
9WNQ|1|b|U|1714
9WNQ|1|b|G|1715
9WNQ|1|b|U|1716
9WNQ|1|b|A|1717
9WNQ|1|b|G|1718
*
9WNQ|1|b|U|1742
9WNQ|1|b|G|1743
9WNQ|1|b|A|1744
9WNQ|1|b|A|1745
9WNQ|1|b|A|1746

Current chains

Chain b

23S ribosomal RNA

Nearby chains