IL_9WW4_015

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

9WW4|1|AA|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_015 not in the Motif Atlas

Homologous match to IL_8GLP_017

Geometric discrepancy: 0.0574

The information below is about IL_8GLP_017

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9WW4|1|AA|C|339
9WW4|1|AA|C|340
9WW4|1|AA|G|341
9WW4|1|AA|G|342
*
9WW4|1|AC|C|32
9WW4|1|AC|G|33

Current chains

Chain AA

28S rRNA (3773-MER)

Chain AC

5.8S rRNA (156-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AN

60S ribosomal protein L13

Chain AP

60S ribosomal protein L15

Chain Al

60S ribosomal protein L37