IL_9WW4_028

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GCCCGG*UCC

Length

9 nucleotides

Bulged bases

9WW4|1|AA|C|501, 9WW4|1|AA|C|502, 9WW4|1|AA|C|503, 9WW4|1|AA|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_028 not in the Motif Atlas

Geometric match to IL_8GLP_141

Geometric discrepancy: 0.2947

The information below is about IL_8GLP_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57267.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

9WW4|1|AA|G|500
9WW4|1|AA|C|501
9WW4|1|AA|C|502
9WW4|1|AA|C|503
9WW4|1|AA|G|504
9WW4|1|AA|G|505
*
9WW4|1|AA|U|653
9WW4|1|AA|C|654
9WW4|1|AA|C|655

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AS

60S ribosomal protein L18