IL_9WW4_123

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_123 not in the Motif Atlas

Homologous match to IL_8GLP_138

Geometric discrepancy: 0.1753

The information below is about IL_8GLP_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14250.4

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

12

Unit IDs

9WW4|1|AA|C|4243
9WW4|1|AA|A|4244
9WW4|1|AA|G|4245
*
9WW4|1|AA|C|4263
9WW4|1|AA|G|4264
9WW4|1|AA|U|4265
9WW4|1|AA|G|4266
9WW4|1|AA|G|4267

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AG

Large ribosomal subunit protein uL18

Chain AM

60S ribosomal protein L11

Chain AV

60S ribosomal protein L21