IL_9WW4_168
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW4_168 not in the Motif Atlas
- Homologous match to IL_8QYX_169
- Geometric discrepancy: 0.0342
- The information below is about IL_8QYX_169
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62879.2
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9WW4|1|AB|G|71
9WW4|1|AB|U|72
9WW4|1|AB|U|73
9WW4|1|AB|A|74
9WW4|1|AB|G|75
9WW4|1|AB|U|76
9WW4|1|AB|A|77
9WW4|1|AB|C|78
*
9WW4|1|AB|G|98
9WW4|1|AB|G|99
9WW4|1|AB|A|100
9WW4|1|AB|A|101
9WW4|1|AB|U|102
9WW4|1|AB|A|103
9WW4|1|AB|C|104
Current chains
- Chain AB
- 5S rRNA (120-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- Large ribosomal subunit protein uL18
- Chain AI
- 60S ribosomal protein L7
- Chain AL
- Ribosomal protein uL16-like
- Chain AU
- 60S ribosomal protein L18a
- Chain AV
- 60S ribosomal protein L21
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