IL_9WW4_254

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

9WW4|1|BA|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_254 not in the Motif Atlas

Homologous match to IL_9PN5_223

Geometric discrepancy: 0.3385

The information below is about IL_9PN5_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9WW4|1|BA|C|1708
9WW4|1|BA|G|1709
9WW4|1|BA|C|1710
9WW4|1|BA|U|1711
*
9WW4|1|BA|A|1822
9WW4|1|BA|A|1823
9WW4|1|BA|A|1824
9WW4|1|BA|A|1825
9WW4|1|BA|G|1826

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ap

60S ribosomal protein L41

Chain BQ

40S ribosomal protein S23

Chain Bf

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein