IL_9WW5_040

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

9WW5|1|AA|C|1214, 9WW5|1|AA|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_040 not in the Motif Atlas

Homologous match to IL_8GLP_043

Geometric discrepancy: 0.3296

The information below is about IL_8GLP_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84227.2

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9WW5|1|AA|C|1082
9WW5|1|AA|U|1083
9WW5|1|AA|C|1084
*
9WW5|1|AA|G|1213
9WW5|1|AA|C|1214
9WW5|1|AA|C|1215
9WW5|1|AA|C|1216
9WW5|1|AA|G|1217

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AI

60S ribosomal protein L7

Chain Ad

60S ribosomal protein L29