IL_9WW5_053

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CC(OMG)*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_053 not in the Motif Atlas

Homologous match to IL_9SUM_025

Geometric discrepancy: 0.0662

The information below is about IL_9SUM_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9WW5|1|AA|C|1520
9WW5|1|AA|C|1521
9WW5|1|AA|OMG|1522
*
9WW5|1|AA|C|1655
9WW5|1|AA|U|1656
9WW5|1|AA|G|1657

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain Ac

Large ribosomal subunit protein uL15