IL_9WW5_067

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AUUA*(PSU)(PSU)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_067 not in the Motif Atlas

Homologous match to IL_9PN5_040

Geometric discrepancy: 0.096

The information below is about IL_9PN5_040

Detailed Annotation

Tandem non-canonical cWW pairs; U in syn

Broad Annotation

Tandem non-canonical cWW pairs; U in syn

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9WW5|1|AA|A|1746
9WW5|1|AA|U|1747
9WW5|1|AA|U|1748
9WW5|1|AA|A|1749
*
9WW5|1|AA|PSU|1781
9WW5|1|AA|PSU|1782
9WW5|1|AA|C|1783
9WW5|1|AA|U|1784

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AG

Large ribosomal subunit protein uL18

Chain AL

Ribosomal protein uL16-like