IL_9WW5_073

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_073 not in the Motif Atlas

Homologous match to IL_8GLP_076

Geometric discrepancy: 0.061

The information below is about IL_8GLP_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9WW5|1|AA|C|1911
9WW5|1|AA|G|1912
9WW5|1|AA|C|1913
9WW5|1|AA|C|1914
9WW5|1|AA|C|1915
9WW5|1|AA|G|1916
9WW5|1|AA|A|1917
9WW5|1|AA|U|1918
*
9WW5|1|AA|G|2064
9WW5|1|AA|G|2065

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AI

60S ribosomal protein L7

Chain AQ

60S ribosomal protein L13a

Chain AU

60S ribosomal protein L18a

Chain Ah

60S ribosomal protein L35a