IL_9WW5_076
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9WW5|1|AA|U|1930, 9WW5|1|AA|C|1931, 9WW5|1|AA|G|2055, 9WW5|1|AA|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW5_076 not in the Motif Atlas
- Homologous match to IL_8GLP_079
- Geometric discrepancy: 0.0371
- The information below is about IL_8GLP_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39054.4
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9WW5|1|AA|C|1926
9WW5|1|AA|U|1927
9WW5|1|AA|C|1928
9WW5|1|AA|A|1929
9WW5|1|AA|U|1930
9WW5|1|AA|C|1931
9WW5|1|AA|A|1932
9WW5|1|AA|G|1933
*
9WW5|1|AA|C|2053
9WW5|1|AA|U|2054
9WW5|1|AA|G|2055
9WW5|1|AA|G|2056
9WW5|1|AA|A|2057
9WW5|1|AA|G|2058
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AK
- 60S ribosomal protein L9
- Chain AO
- 60S ribosomal protein L14
- Chain AQ
- 60S ribosomal protein L13a
- Chain AU
- 60S ribosomal protein L18a
- Chain Ao
- Ubiquitin-60S ribosomal protein L40
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