IL_9WW5_100

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_100 not in the Motif Atlas

Geometric match to IL_8GLP_305

Geometric discrepancy: 0.0526

The information below is about IL_8GLP_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

12

Unit IDs

9WW5|1|AA|G|2847
9WW5|1|AA|G|2848
9WW5|1|AA|A|2849
9WW5|1|AA|A|2850
9WW5|1|AA|G|2851
9WW5|1|AA|U|2852
9WW5|1|AA|C|2853
9WW5|1|AA|G|2854
9WW5|1|AA|G|2855
*
9WW5|1|AA|C|3837
9WW5|1|AA|U|3838
9WW5|1|AA|G|3839
9WW5|1|AA|U|3840
9WW5|1|AA|OMC|3841

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AX

60S ribosomal protein L23