IL_9WW5_124

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_124 not in the Motif Atlas

Homologous match to IL_9PN5_095

Geometric discrepancy: 0.1799

The information below is about IL_9PN5_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14250.4

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

12

Unit IDs

9WW5|1|AA|C|4243
9WW5|1|AA|A|4244
9WW5|1|AA|G|4245
*
9WW5|1|AA|C|4263
9WW5|1|AA|G|4264
9WW5|1|AA|U|4265
9WW5|1|AA|G|4266
9WW5|1|AA|G|4267

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AG

Large ribosomal subunit protein uL18

Chain AM

60S ribosomal protein L11

Chain AV

60S ribosomal protein L21