IL_9WW5_157

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

(PSU)(PSU)CG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_157 not in the Motif Atlas

Homologous match to IL_9H3G_140

Geometric discrepancy: 0.1376

The information below is about IL_9H3G_140

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9WW5|1|AA|PSU|4972
9WW5|1|AA|PSU|4973
9WW5|1|AA|C|4974
9WW5|1|AA|G|4975
*
9WW5|1|AA|C|4983
9WW5|1|AA|C|4984
9WW5|1|AA|U|4985
9WW5|1|AA|G|4986

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AR

60S ribosomal protein L17

Chain Af

60S ribosomal protein L31