IL_9WW5_175

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_175 not in the Motif Atlas

Homologous match to IL_9PN5_146

Geometric discrepancy: 0.1153

The information below is about IL_9PN5_146

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9WW5|1|BA|C|49
9WW5|1|BA|A|50
9WW5|1|BA|U|51
*
9WW5|1|BA|A|476
9WW5|1|BA|G|477

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain Bc

40S ribosomal protein S24