IL_9WW5_178

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

G(PSU)UAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_178 not in the Motif Atlas

Geometric match to IL_9SUM_187

Geometric discrepancy: 0.2643

The information below is about IL_9SUM_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.6

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9WW5|1|BA|G|108
9WW5|1|BA|PSU|109
9WW5|1|BA|U|110
9WW5|1|BA|A|111
9WW5|1|BA|U|112
*
9WW5|1|BA|A|349
9WW5|1|BA|C|350
9WW5|1|BA|G|351
9WW5|1|BA|U|352
9WW5|1|BA|C|353

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BH

40S ribosomal protein S8

Chain BJ

40S ribosomal protein S11