IL_9WW5_182

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

9WW5|1|BA|OMU|172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_182 not in the Motif Atlas

Homologous match to IL_9H3G_165

Geometric discrepancy: 0.168

The information below is about IL_9H3G_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9WW5|1|BA|G|145
9WW5|1|BA|G|146
9WW5|1|BA|A|147
9WW5|1|BA|U|148
9WW5|1|BA|A|149
9WW5|1|BA|A|150
9WW5|1|BA|C|151
*
9WW5|1|BA|G|167
9WW5|1|BA|C|168
9WW5|1|BA|U|169
9WW5|1|BA|A|170
9WW5|1|BA|A|171
9WW5|1|BA|OMU|172
9WW5|1|BA|A|173
9WW5|1|BA|OMC|174

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AY

60S ribosomal protein L24

Chain BW

40S ribosomal protein S6

Chain Bc

40S ribosomal protein S24