IL_9WW5_189
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9WW5|1|BA|U|361, 9WW5|1|BA|C|399, 9WW5|1|BA|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW5_189 not in the Motif Atlas
- Homologous match to IL_9SUM_155
- Geometric discrepancy: 0.0769
- The information below is about IL_9SUM_155
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9WW5|1|BA|U|359
9WW5|1|BA|A|360
9WW5|1|BA|U|361
9WW5|1|BA|C|362
9WW5|1|BA|A|363
9WW5|1|BA|A|364
*
9WW5|1|BA|U|396
9WW5|1|BA|G|397
9WW5|1|BA|A|398
9WW5|1|BA|C|399
9WW5|1|BA|C|400
9WW5|1|BA|A|401
9WW5|1|BA|C|402
9WW5|1|BA|G|403
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BH
- 40S ribosomal protein S8
- Chain BJ
- 40S ribosomal protein S11
- Chain BQ
- 40S ribosomal protein S23
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