IL_9WW5_196

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CAG*CCUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_196 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3867

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9WW5|1|BA|C|532
9WW5|1|BA|A|533
9WW5|1|BA|G|534
*
9WW5|1|BA|C|549
9WW5|1|BA|C|550
9WW5|1|BA|U|551
9WW5|1|BA|G|552

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BX

40S ribosomal protein S9

Chain Bf

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein