IL_9WW5_199

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_199 not in the Motif Atlas

Geometric match to IL_3R2D_002

Geometric discrepancy: 0.2544

The information below is about IL_3R2D_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9WW5|1|BA|U|566
9WW5|1|BA|C|567
9WW5|1|BA|C|568
9WW5|1|BA|A|569
*
9WW5|1|BA|U|581
9WW5|1|BA|U|582
9WW5|1|BA|A|583
9WW5|1|BA|A|584

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BX

40S ribosomal protein S9

Chain Bc

40S ribosomal protein S24