IL_9WW5_202
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9WW5|1|BA|A|628, 9WW5|1|BA|U|630, 9WW5|1|BA|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW5_202 not in the Motif Atlas
- Homologous match to IL_9PN5_173
- Geometric discrepancy: 0.2361
- The information below is about IL_9PN5_173
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9WW5|1|BA|G|611
9WW5|1|BA|U|612
9WW5|1|BA|G|613
9WW5|1|BA|C|614
9WW5|1|BA|C|615
9WW5|1|BA|A|616
9WW5|1|BA|G|617
*
9WW5|1|BA|C|624
9WW5|1|BA|G|625
9WW5|1|BA|G|626
9WW5|1|BA|U|627
9WW5|1|BA|A|628
9WW5|1|BA|A|629
9WW5|1|BA|U|630
9WW5|1|BA|U|631
9WW5|1|BA|C|632
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BE
- 40S ribosomal protein S3
- Chain BQ
- 40S ribosomal protein S23
- Chain Bf
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
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