IL_9WW5_206

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_206 not in the Motif Atlas

Homologous match to IL_9PN5_176

Geometric discrepancy: 0.114

The information below is about IL_9PN5_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

9WW5|1|BA|C|676
9WW5|1|BA|G|677
9WW5|1|BA|U|678
9WW5|1|BA|A|679
9WW5|1|BA|G|680
*
9WW5|1|BA|U|1025
9WW5|1|BA|C|1026
9WW5|1|BA|A|1027
9WW5|1|BA|A|1028
9WW5|1|BA|G|1029

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BJ

40S ribosomal protein S11

Chain BQ

40S ribosomal protein S23

Chain BZ

40S ribosomal protein S13

Chain Bb

40S ribosomal protein S15a