IL_9WW5_231

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

C(PSU)G*CGCG

Length

7 nucleotides

Bulged bases

9WW5|1|BA|PSU|1232

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_231 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3524

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9WW5|1|BA|C|1231
9WW5|1|BA|PSU|1232
9WW5|1|BA|G|1233
*
9WW5|1|BA|C|1525
9WW5|1|BA|G|1526
9WW5|1|BA|C|1527
9WW5|1|BA|G|1528

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BK

40S ribosomal protein S15

Chain BL

40S ribosomal protein S16

Chain BM

40S ribosomal protein S18

Chain BN

Small ribosomal subunit protein eS19

Chain BO

40S ribosomal protein S20