IL_9WW5_243

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CAUGC*(OMG)AGG

Length

9 nucleotides

Bulged bases

9WW5|1|BA|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_243 not in the Motif Atlas

Geometric match to IL_8GLP_337

Geometric discrepancy: 0.3417

The information below is about IL_8GLP_337

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9WW5|1|BA|C|1395
9WW5|1|BA|A|1396
9WW5|1|BA|U|1397
9WW5|1|BA|G|1398
9WW5|1|BA|C|1399
*
9WW5|1|BA|OMG|1447
9WW5|1|BA|A|1448
9WW5|1|BA|G|1449
9WW5|1|BA|G|1450

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BL

40S ribosomal protein S16

Chain BO

40S ribosomal protein S20

Chain BU

Receptor of activated protein C kinase 1

Chain Bh

40S ribosomal protein S17