IL_9WW5_248
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- GACUGG*CCAU(PSU)C
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW5_248 not in the Motif Atlas
- Geometric match to IL_8SSW_003
- Geometric discrepancy: 0.3043
- The information below is about IL_8SSW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82292.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
9WW5|1|BA|G|1536
9WW5|1|BA|A|1537
9WW5|1|BA|C|1538
9WW5|1|BA|U|1539
9WW5|1|BA|G|1540
9WW5|1|BA|G|1541
*
9WW5|1|BA|C|1592
9WW5|1|BA|C|1593
9WW5|1|BA|A|1594
9WW5|1|BA|U|1595
9WW5|1|BA|PSU|1596
9WW5|1|BA|C|1597
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BF
- 40S ribosomal protein S5
- Chain BL
- 40S ribosomal protein S16
- Chain BM
- 40S ribosomal protein S18
- Chain BN
- Small ribosomal subunit protein eS19
- Chain Bd
- 40S ribosomal protein S25
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