IL_9WW5_250

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UACG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_250 not in the Motif Atlas

Geometric match to IL_8CRE_401

Geometric discrepancy: 0.3249

The information below is about IL_8CRE_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9WW5|1|BA|U|1560
9WW5|1|BA|A|1561
9WW5|1|BA|C|1562
9WW5|1|BA|G|1563
*
9WW5|1|BA|C|1572
9WW5|1|BA|G|1573
9WW5|1|BA|C|1574
9WW5|1|BA|G|1575

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BN

Small ribosomal subunit protein eS19