IL_9WW5_252

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9WW5|1|BA|C|1701, 9WW5|1|BA|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_252 not in the Motif Atlas

Homologous match to IL_9SUM_216

Geometric discrepancy: 0.1646

The information below is about IL_9SUM_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

9WW5|1|BA|C|1700
9WW5|1|BA|C|1701
9WW5|1|BA|G|1702
*
9WW5|1|BA|C|1833
9WW5|1|BA|A|1834
9WW5|1|BA|A|1835
9WW5|1|BA|G|1836

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BR

40S ribosomal protein S26