IL_9WW5_253

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_253 not in the Motif Atlas

Homologous match to IL_9SUM_217

Geometric discrepancy: 0.1537

The information below is about IL_9SUM_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.5

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9WW5|1|BA|G|1702
9WW5|1|BA|OMC|1703
9WW5|1|BA|C|1704
9WW5|1|BA|C|1705
*
9WW5|1|BA|G|1829
9WW5|1|BA|U|1830
9WW5|1|BA|A|1831
9WW5|1|BA|6MZ|1832
9WW5|1|BA|C|1833

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ap

60S ribosomal protein L41