IL_9WW5_262

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_262 not in the Motif Atlas

Geometric match to IL_9AXU_042

Geometric discrepancy: 0.1451

The information below is about IL_9AXU_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9WW5|1|BA|C|1739
9WW5|1|BA|C|1740
9WW5|1|BA|U|1741
*
9WW5|1|BA|A|1793
9WW5|1|BA|C|1794
9WW5|1|BA|G|1795

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AY

60S ribosomal protein L24

Chain BH

40S ribosomal protein S8

Chain BW

40S ribosomal protein S6