IL_9XFK_004

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

9XFK|1|I|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_004 not in the Motif Atlas

Homologous match to IL_7A0S_004

Geometric discrepancy: 0.4478

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9XFK|1|I|G|81
9XFK|1|I|U|82
9XFK|1|I|A|83
9XFK|1|I|A|84
9XFK|1|I|G|85
*
9XFK|1|I|C|97
9XFK|1|I|G|98
9XFK|1|I|U|99
9XFK|1|I|U|100
9XFK|1|I|A|101
9XFK|1|I|U|102
9XFK|1|I|A|103
9XFK|1|I|A|104
9XFK|1|I|C|105

Current chains

Chain I

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL24

Chain g

50S ribosomal protein L29