IL_9XFK_016

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9XFK|1|I|G|801, 9XFK|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_016 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1241

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

9XFK|1|I|G|674
9XFK|1|I|A|675
9XFK|1|I|A|676
9XFK|1|I|A|677
9XFK|1|I|C|678
*
9XFK|1|I|G|799
9XFK|1|I|A|800
9XFK|1|I|G|801
9XFK|1|I|A|802
9XFK|1|I|U|803
9XFK|1|I|A|804
9XFK|1|I|G|805
9XFK|1|I|C|806

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15