IL_9XFK_024

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9XFK|1|I|U|846, 9XFK|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_024 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.2986

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

9XFK|1|I|A|844
9XFK|1|I|A|845
9XFK|1|I|U|846
9XFK|1|I|U|847
9XFK|1|I|C|848
*
9XFK|1|I|G|930
9XFK|1|I|U|931
9XFK|1|I|U|932
9XFK|1|I|A|933
9XFK|1|I|U|934

Current chains

Chain I

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L30