IL_9XFK_035

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_035 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.1625

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_46868.1

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

9XFK|1|I|U|1004
9XFK|1|I|C|1005
9XFK|1|I|C|1006
9XFK|1|I|C|1007
9XFK|1|I|A|1008
9XFK|1|I|A|1009
9XFK|1|I|A|1010
9XFK|1|I|G|1011
*
9XFK|1|I|C|1150
9XFK|1|I|A|1151

Current chains

Chain I

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L13

Chain Y

50S ribosomal protein L20