IL_9XFK_113
3D structure
- PDB id
- 9XFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9XFK_113 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1354
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9XFK|1|J|C|71
9XFK|1|J|G|72
9XFK|1|J|A|73
9XFK|1|J|U|74
9XFK|1|J|G|75
9XFK|1|J|G|76
9XFK|1|J|U|77
9XFK|1|J|A|78
9XFK|1|J|G|79
*
9XFK|1|J|C|97
9XFK|1|J|G|98
9XFK|1|J|A|99
9XFK|1|J|G|100
9XFK|1|J|A|101
9XFK|1|J|G|102
9XFK|1|J|U|103
9XFK|1|J|A|104
9XFK|1|J|G|105
Current chains
- Chain J
- 5S rRNA
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain U
- Large ribosomal subunit protein uL16
- Chain d
- 50S ribosomal protein L25
Coloring options: