IL_9XFL_016

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9XFL|1|I|G|801, 9XFL|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFL_016 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1197

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

9XFL|1|I|G|674
9XFL|1|I|A|675
9XFL|1|I|A|676
9XFL|1|I|A|677
9XFL|1|I|C|678
*
9XFL|1|I|G|799
9XFL|1|I|A|800
9XFL|1|I|G|801
9XFL|1|I|A|802
9XFL|1|I|U|803
9XFL|1|I|A|804
9XFL|1|I|G|805
9XFL|1|I|C|806

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15