IL_9XTC_016

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTC_016 not in the Motif Atlas

Homologous match to IL_6CZR_125

Geometric discrepancy: 0.1433

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9XTC|1|A|G|292
9XTC|1|A|G|293
*
9XTC|1|A|U|304
9XTC|1|A|G|305
9XTC|1|A|A|306
9XTC|1|A|C|307
9XTC|1|A|C|308

Current chains

Chain A

RNA (1176-MER)

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16