IL_9XTC_048

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTC_048 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.357

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

9XTC|1|A|G|1416
9XTC|1|A|G|1417
9XTC|1|A|A|1418
9XTC|1|A|G|1419
*
9XTC|1|A|U|1481
9XTC|1|A|G|1482
9XTC|1|A|A|1483
9XTC|1|A|C|1484

Current chains

Chain A

RNA (1176-MER)

Nearby chains