IL_9Y49_080

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCCGGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_080 not in the Motif Atlas

Homologous match to IL_9H3G_055

Geometric discrepancy: 0.1927

The information below is about IL_9H3G_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9Y49|1|A5|C|1911
9Y49|1|A5|G|1912
9Y49|1|A5|C|1913
9Y49|1|A5|C|1914
9Y49|1|A5|G|1915
9Y49|1|A5|G|1916
9Y49|1|A5|A|1917
9Y49|1|A5|U|1918
*
9Y49|1|A5|G|2064
9Y49|1|A5|G|2065

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CF

60S ribosomal protein L7

Chain CO

60S ribosomal protein L13a

Chain CS

60S ribosomal protein L18a

Chain Cf

60S ribosomal protein L35a