IL_9Y49_120

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

9Y49|1|A6|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_120 not in the Motif Atlas

Homologous match to IL_8GLP_116

Geometric discrepancy: 0.1848

The information below is about IL_8GLP_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55206.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9Y49|1|A6|C|3700
9Y49|1|A6|C|3701
9Y49|1|A6|A|3702
9Y49|1|A6|G|3703
*
9Y49|1|A6|C|3749
9Y49|1|A6|G|3750

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S ribosomal protein L8