IL_9Y4G_035

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_035 not in the Motif Atlas

Geometric match to IL_8CRE_391

Geometric discrepancy: 0.1402

The information below is about IL_8CRE_391

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9Y4G|1|A5|G|740
9Y4G|1|A5|C|741
9Y4G|1|A5|G|742
*
9Y4G|1|A5|C|922
9Y4G|1|A5|C|923
9Y4G|1|A5|C|924

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain CM

60S ribosomal protein L14

Chain CS

60S ribosomal protein L18a