IL_9Y4G_055

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_055 not in the Motif Atlas

Homologous match to IL_9PN5_031

Geometric discrepancy: 0.1338

The information below is about IL_9PN5_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

9Y4G|1|A5|G|1586
9Y4G|1|A5|G|1587
9Y4G|1|A5|U|1588
9Y4G|1|A5|C|1589
*
9Y4G|1|A5|G|1605
9Y4G|1|A5|U|1606
9Y4G|1|A5|C|1607

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CB

60S ribosomal protein L3

Chain Cj

60S ribosomal protein L37